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Edit alignmentsMove residues and gapsThe placement of gaps in the alignment can be changed by modifying the parameters when creating the alignment(see Create an alignment).However, gaps and residues can also be moved after the alignment is created: select one or more gaps or residues in the alignment | drag the selection to moveThis can be done both for single sequences, but also for multiplesequences by making a selection covering more than one sequence.When you have made the selection, the mouse pointer turns into ahorizontal arrow indicating that the selection can be moved (seefigure 12.8).Note! Residues can only be moved when they are next to a gap. Figure 12.8: Moving a part of an alignment. Notice the change of mouse pointer to a horizontal arrow. Insert gapsThe placement of gaps in thealignment can be changed by modifying the parameters when creatingthe alignment. However, gaps can also be added manually after thealignment is created.To insert extra gaps: select a part of the alignment | right-clickthe selection | Add gaps before/afterIf you have made a selection covering five residues for example, a gap offive will be inserted. In this way you can easily control the numberof gaps to insert. Gaps will be inserted in the sequences that youselected. If you make a selection in two sequences in an alignment,gaps will be inserted into these two sequences. This means thatthese two sequences will be displaced compared to the othersequences in the alignment. Delete residues and gapsResidues or gaps can be deleted for individual sequences or for thewhole alignment. For individual sequences: select the part of the sequence you want to delete |right-click the selection | EditSelection () | Delete the text in thedialog | ReplaceThe selection shown in the dialog will be replaced by the text you enter. If you delete the text, the

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